Benutzerspezifische Werkzeuge

Publikationen

2022

Helm B, Geissler M, Mayer R, Schubert S, Oertel R, Dumke R, Dalpke A, El-Armouche A, Renner B, Krebs P. Regional and temporal differences in the relation between SARS-CoV-2 biomarkers in wastewater and estimated infection prevalence - Insights from long-term surveillance. Sci. Total Environ. 2023, 857, 159358. doi: 10.1016/j.scitotenv.2022.159358.

Dumke R, Geissler M, Skupin A, Helm B, Mayer R, Schubert S, Oertel R, Renner B, Dalpke A.H.Simultaneous detection of SARS-CoV-2 and influenza virus in wastewater of two cities in southeastern Germany, January to May 2022. Int. J. Environ. Res. Public Health 2022, 19(20), 13374. doi 10.3390/ijerph192013374.

Bigge R., Bunk B., Rudolph W.W., Gunzer F., Coldewey S.M., Riedel T., Schröttner P. Comparative study of different diagnostic routine methods for the identification of Acinetobacter radioresistensMicroorganisms 202210(9), 1767

Benamar M, Harb H, Chen Q, Wang M, Chan TMF, Fong J, Phipatanakul W, Cunningham A, Ertem D, Petty CR, Mousavi AJ, Sioutas C, Crestani E, Chatila TA. A common IL-4 receptor variant promotes asthma severity via a Treg cell GRB2-IL-6-Notch4 circuit. Allergy. 2022 Jul 16. doi: 10.1111/all.15444. Online ahead of print.

Hu M, Alashkar Alhamwe B, Santner-Nanan B, Miethe S, Harb H, Renz H, Potaczek DP, Nanan RK. Short-Chain Fatty Acids Augment Differentiation and Function of Human Induced Regulatory T Cells. Int J Mol Sci. 2022 May 20;23(10):5740. doi: 10.3390/ijms23105740.

Banzon TM, Kelly MS, Bartnikas LM, Sheehan WJ, Cunningham A, Harb H, Crestani E, Valeri L, Greco KF, Chatila TA, Phipatanakul W, Lai PS. Atopic Dermatitis Mediates the Association Between an IL4RA Variant and Food Allergy in School-Aged Children. J Allergy Clin Immunol Pract. 2022 Aug;10(8):2117-2124.e4. doi: 10.1016/j.jaip.2022.04.042. Epub 2022 May 16.

Harb H, Chatila TA. Recent patents in allergy and immunology: Method for treating asthma or allergic disease via anti-Notch4 mAb. Allergy. 2022 Jul;77(7):2260-2261. doi: 10.1111/all.15317. Epub 2022 Apr 28.

TRPV4 Stimulation Level Regulates Ca2+-Dependent Control of Human Corneal Endothelial Cell Viability and Survival. ; Donau J, Luo H, Virta I, Skupin A, Pushina M, Loeffler J, Haertel FV, Das A, Kurth T, Gerlach M, Lindemann D, Reinach PS, Mergler S, Valtink M. ;Membranes (Basel). 2022 Feb 28;12(3):281. doi: 10.3390/membranes12030281.

Kopf A, Bunk B, Coldewey SM, Gunzer F, Riedel T, Schröttner P.Comparative Genomic Analysis of the Human Pathogen Wohlfahrtiimonas Chitiniclastica Provides Insight Into the Identification of Antimicrobial Resistance Genotypes and Potential Virulence Traits. Front Cell Infect Microbiol. 2022 Jul 7;12:912427. 

Schultz J, Wruck JE, Trips E, Pfeiffer R, Grählert X, Münchow S, Schröttner P, Dragu A, Fitze G. Semi-occlusive management of fingertip injuries with finger caps: A randomized controlled trial in children and adults. Medicine (Baltimore). 2022 Jul 8;101(27):e29324. 

Dumke R (2022): Molecular tools for typing Mycoplasma pneumoniae and Mycoplasma genitalium. Front. Microbiol. 13:904494. doi: 10.3389/fmicb.2022.904494

Meyer Sauteur P, Beeton ML, Uldum SA, Bossuyt N, Vermeulen M, Loens K, Pereyre S, Bebear C, Kese D, Day J, Afshar B, Chalker VJ, Greub G, Nir-Paz R, and Dumke R. Mycoplasma pneumoniae detections before and during the COVID-19 pandemic: results of a global survey, 2017 to 2021. Euro Surveill. 2022; 27(19):pii=2100746; doi.org/10.2807/1560-7917.

Changes in Microbiome Dominance Are Associated With Declining Lung Function and Fluctuating Inflammation in People With Cystic Fibrosis Dario L. Frey, C. Bridson, S. Dittrich, S. Y. Graeber, M. Stahl, S. Wege, F. Herth, O. Sommerburg, C. Schultz, A. Dalpke, M. A. Mall and S. Boutin; Frontiers in Microbiology 2022 Vol. 13; DOI: 10.3389/fmicb.2022.885822

Stadtmüller M, Laubner A, Rost F, Winkler S, Patrasová E, Šimůnková L, Reinhardt S, Beil J, Dalpke AH, and Yi  20 B (2022): Emergence and spread of a sub-lineage of SARS-CoV-2 Alpha variant B.1.1.7 in Europe, and with further evolution of spike mutation accumulations shared with the Beta and Gamma variants. Virus Evol, 8(1), 1-9, doi.org/10.1093/ve/veac010      

Mentrup T, Stumpff-Niggemann AY, Leinung N, Schlosser K, Schubert K, Wehner R, Tunger A, Schatz V, Neubert P, Gradtke AC, Wolf J, Rose-John S, Saftig P, Dalpke A, Jantsch J, Schmitz M, Fluhrer R, Jacobsen I and Schröder B (2022): Phagosomal signalling of the C-type lectin receptor Dectin-1 is terminated by intramembrane proteolysis. Nat Comm 13(1):1880. doi: 10.1038/s41467-022-29474-3.               

Grinberg S, Schubert S, Hochauf-Stange K,  Dalpke AH, Narvaez Encalada M (2022): Saving time in blood culture diagnostics: A prospective evaluation of the Qvella FAST-PBC PrepTM application on the FastTM System.J Clin Microbiol, doi: 10.1128/jcm.02533-21, in press

Tony-Odigie A, Wilke L, Boutin S, Dalpke AH and Yi B (2022):  Commensal bacteria in the cystic fibrosis airway microbiome reduce P. aeruginosa induced inflammation. Front Cell Infect Microbiol 12:824101, doi: 10.3389/fcimb.2022.824101

2021

ICTV Virus Taxonomy Profile: Retroviridae 2021. Coffin J, Blomberg J, Fan H, Gifford R, Hatziioannou T, Lindemann D, Mayer J, Stoye J, Tristem M, Johnson W, Ictv Report Consortium. J Gen Virol. 2021 Dec;102(12):001712. doi: 10.1099/jgv.0.001712.

Viral infiltration of pancreatic islets in patients with COVID-19. Steenblock C, Richter S, Berger I, Barovic M, Schmid J, Schubert U, Jarzebska N, von Mässenhausen A, Linkermann A, Schürmann A, Pablik J, Dienemann T, Evert K, Rodionov RN, Semenova NY, Zinserling VA, Gainetdinov RR, Baretton G, Lindemann D, Solimena M, Ludwig B, Bornstein SR. Nat Commun. 2021 Jun 10;12(1):3534. doi: 10.1038/s41467-021-23886-3.

The Unique, the Known, and the Unknown of Spumaretrovirus Assembly. Lindemann D, Hütter S, Wei G, Löchelt M. Viruses. 2021 Jan 13;13(1):105. doi: 10.3390/v13010105.

Individual HLA-A, -B, -C, and -DRB1 Genotypes Are No Major Factors Which Determine COVID-19 Severity. Schetelig J, Heidenreich F, Baldauf H, Trost S, Falk B, Hoßbach C, Real R, Roers A, Lindemann D, Dalpke A, Kolditz M, de With K, Bornhäuser M, Bonifacio EE, Rücker-Braun E, Lange V, Markert J, Barth R, Hofmann JA, Sauter J, Bernas SN, Schmidt AH. Front Immunol. 2021 Jul 26;12:698193. doi: 10.3389/fimmu.2021.698193. eCollection 2021.

Yi B, Dalpke AH (2021): Revisiting the intrageneric structure of the genus Pseudomonas with complete whole genome sequence information: Insights into Diversity and Host-related Genetic Determinants. Infect. Genet. Evol.,https://doi.org/10.1016/j.meegid.2021.105183,

Percy Schröttner, Thomas Riedel, Stephanie Müller und Boyke Bunk;  Robinsoniella peoriensis: Was ist bisher bekannt?  MIKROBIOLOGE 30.Jg. 2020

Metzger MI, Gräber SY, Stahl M, Sommerburg O, Mall MA, Dalpke AH and Boutin S (2021): A volatile and dynamic longitudinal microbiome is associated with less reduction in lung function in adolescents with cystic fibrosis. Front Cell Infect Microbiol, 11:763121. doi: 10.3389/fcimb.2021.763121

Anna Kopf, Boyke Bunk, Sina M. Coldewey, Florian Gunzer, Thomas Riedel and Percy Schröttner; Identification and Antibiotic Profiling of Wohlfahrtiimonas chitiniclastica, an Underestimated Human Pathogen Front. Microbiol., 22 September 2021 https://doi.org/10.3389/fmicb.2021.712775

Dumke R,  Spornraft-Ragaller P (2021): Antibiotic resistance and genotypes of Mycoplasma genitalium during a resistance-guided treatment regime in a German university hospital.Antibiotics 10, 962. doi.org/10.3390/antibiotics10080962

Körholz JC, Gabrielyan A, Sowerby JM, Boschann F, Chen LS, Paul D, Brandt D, Kleymann J, Kolditz M, Töpfner N, Knöfler R, Jacobsen EM, Wolf C, Conrad K, Röber N, Lee-Kirsch MA, Smith KG, Mundlos S, Berner R, Dalpke A, Schuetz C, Rae W (2021): One gene, many facets: multiple immune pathway dysregulation in SOCS1 haploinsufficiency. Front Immunol 12:680334, https://doi.org/10.3389/fimmu.2021.680334

Haag L, Blankenburg J, Unrath M, Grabietz J, Kahre E, Galow L, Schneider J, Dalpke AH, Lück C, Büttner L, Berner R, Armann JP (2021): Prevalence and Transmission of SARS-CoV-2 in Childcare Facilities: A Longitudinal Study.J Pediatr: S0022-3476(21)00746-0. doi: 10.1016/j.jpeds.2021.07.054. Online ahead of print.

Yi B, Poetsch A, Stadtmüller M, Rost F, Winkler S, Dalpke, A (2021). Phylogenetic analysis of SARS-CoV-2 lineage development across the first and second waves in Eastern Germany in 2020: Insights into the cause of the second wave. Epidemiology and Infection, 1-9. doi:10.1017/S0950268821001461 in press

Kahre E, Galow L, Unrath M, Haag L, Blankenburg J, Dalpke AH, Lück C, Berner R, Armann JP (2021): Kinetics and seroprevalence of SARS-CoV-2 antibodies – a comparison of 3 different assays. Sci Rep 11(1):14893. doi:10.1038/s41598-021-94453-5

Leitz DHW*, Duerr J*, Mulugeta S, Agircan AS, Zimmermann S, Kawabe H, Dalpke AH, Beers MF, Mall MA (2021): Congenital deletion of Nedd4-2 in lung epithelial cells causes progressive alveolitis and pulmonary fibrosis in neonatal mice. Int. J. Mol. Sci. 22: 6146. https://doi.org/10.3390/ijms22116146

Schetelig J, Baldauf H, Wendler S, Heidenreich F, Real R, Kolditz M, Rosner A, Dalpke A, With K, Lange V, Markert J, Barth R, Bunzel C, Endert D, Hofmann JA, Sauter J, Bernas SN, Schmidt AH (2021): Risk Factors for a Severe Course of COVID-19 in Persons Aged 18 to 61.Dtsch Arztebl Int. 118(16):288-289. doi: 10.3238/arztebl.m2021.0200.

Galow L, Haag L, Kahre E, Blankenburg J, Dalpke AH, Lück C, Berner R, Armann JP (2021): Lower Household transmission rates of SARS-CoV-2 from children compared to adults. J Infect, 83(1):e34-e36, doi:https://doi.org/10.1016/j.jinf.2021.04.022,  

Arweiler NB, Rahmel V, Alhamwe BA, Alhamdan F, Zemlin M, Boutin S, Dalpke A, Renz H (2021): Dental biofilm and saliva microbiome and its interplay with pediatric allergies. Microorganisms 9: 1330, https://doi.org/10.3390/microorganisms9061330

Meyer Sauteur PM, Pánisová E, Seiler M, Theiler M, Berger C, Dumke R. 2021. Mycoplasma pneumoniae genotypes and clinical outcome in children. J Clin Microbiol. 59:e00748-21. https://doi.org/10.1128/JCM .00748-21.

Probst K, Nurjadi D, Heeg K, Frede AM, Dalpke A, Boutin S (2021): Molecular detection of carbapenemases in Enterobacterales: A comparison of real-time multiplex PCR and whole genome sequencing.Antibiotics 10: 726, https://doi.org/10.3390/antibiotics10060726

Kirsten C, Unrath M, Lück C, Dalpke AH, Berner R, Armann JP (2021): SARS-CoV-2 seroprevalence in students and teachers – a longitudinal study from May to October 2020 in German secondary schools.BMJ Open 11(6):e049876, doi: 10.1136/bmjopen-2021-049876

Use of different approaches for the culture-independent typing of Mycoplasma pneumoniae from two geographically distinct regions. Roger Dumke, Nadia Rodriguez;  https://doi.org/10.1016/j.mimet.2021.106239

Muhandes L, Chapsa M, Pippel M, Behrendt R, Ge Y, Dahl A, Yi B, Dalpke A, Winkler S, Hiller M, Boutin S, Beissert S, Jessberger R, Fallon PG, Roers A (2021): Low threshold for cutaneous allergen sensitization but no spontaneous dermatitis or atopy in filaggrin-deficient mice.J Invest Derm, S0022-202X(21)01155-6. doi: 10.1016/j.jid.2021.02.763

Galow L, Haag L, Kahre E, Blankenburg J, Dalpke AH, Lück C, Berner R, Armann JP (2021): Lower household transmission rates of SARS-CoV-2 from children compared to adults.Journal of Infection, doi:https://doi.org/10.1016/j.jinf.2021.04.022, in press

Antimicrobial resistance in clinical isolates of Ureaplasma spp. from samples in Germany.Dumke R (2021); Antimicrob Agents Chemother, 65:e02342-20. doi: 10.1128/AAC.02342-20.

Probst K, Boutin S, Bandilla M, Heeg K, Dalpke AH (2021): Fast and automated detection of common carbapenemase genes using multiplex real-time PCR on the BD MAX™ system. J Microbiol Meth, in press,  https://doi.org/10.1016/j.mimet.2021.106224

Emergence of Macrolide-Resistant Mycoplasma pneumoniae during an Outbreak in a Primary School: Clinical Characterization of Hospitalized Children.; Hubert D, Dumke R, Weichert S, Welker S, Tenenbaum T, Schroten H (2021):  Pathogens 10, 328. https://doi.org/10.3390/pathogens10030328.

Changes in the cystic fibrosis airway microbiome in response to CFTR modulator therapy; Yi B, Dalpke A, Boutin S (2021):Front Cell Infect Microbiol, 11:184, https://doi.org/10.3389/fcimb.2021.548613

Blood Group A Epitopes do not Facilitate Entry of SARS-CoV-2,;  Schetelig J, Baldauf H, Wendler S, Heidenreich F, Real R, Kolditz M, Rosner A, Dalpke A, De With K, Lange V, Markert J, Barth R, Bunzel C, Endert D,
Hofmann JA, Sauter J, Bernas SN, Schmidt AH (20219:  J Int Med, doi:
10.1111/joim.13256,

Effects of Lumacaftor-Ivacaftor on Lung Clearance Index, Magnetic Resonance Imaging and
Airway Microbiome in Phe508del Homozygous Patients with Cystic Fibrosis 
: Graeber SY*, Boutin S*, Wielpütz MO, Joachim C, Frey DL, Wege S, Sommerburg O, Kauczor HU, Stahl M, Dalpke AH, Mall MA (2021). Ann.
Am. Thoracic Society
,doi: 10.1513/AnnalsATS.202008-1054OC. PMID:  33600745

Evaluation of two methods to concentrate SARS-CoV-2 from untreated wastewater.; Dumke R, de la Cruz Barron M, Oertel R, Helm B, Kallies R, Berendonk TU, Dalpke A (2021):  Pathogens, 10(2): 195; doi.org/10.3390/pathogens10020195   IF3,018

In Search of Patient Zero: Visual Analytics of Pathogen Transmission Pathways in Hospitals; Baumgartl T, Petzold M, Wunderlich, Höhn M, Archambault D, Lieser M, Dalpke A, Scheithauer S, Marschollek M, Eichel VM, Mutters NT,
HiGHmed Consortium, and von Landesberger T (2020);
IEEE Trans. Vis. Comput. Graph., 1-11, doi10.1109/TVCG.2020.3030437

Frey DL*, Boutin S*, Dittrich S*, Graeber SY, Stahl M, Wege S, Herth F, Sommerburg O, Schultz C, Mall M, Dalpke A (2021): Relationship between airway dysbiosis, inflammation and lung function in adults with cystic fibrosis. J Cyst Fibr,

2020

Identification of an Intermediate Step in Foamy Virus Fusion. Dupont A, Glück IM, Ponti D, Stirnnagel K, Hütter S, Perrotton F, Stanke N, Richter S, Lindemann D, Lamb DC. Viruses. 2020 Dec 21;12(12):1472. doi: 10.3390/v12121472.

HIV-2 Vif and foamy virus Bet antagonize APOBEC3B by different mechanisms. Zhang Z, Perković M, Gu Q, Balakrishnan K, Sangwiman A, Häussinger D, Lindemann D, Münk C. Virology. 2021 Feb;554:17-27. doi: 10.1016/j.virol.2020.11.013.

1598. Clinical implications of azole-resistant vs. azole-susceptible invasive aspergillosis in hematological malignancy (CLARITY) – a multicenter study; Danila Seidel, PhD, Oliver Cornely, Prof,  Marouan Zarrouk, PhD, Philipp Koehler, MD, Jacques F Meis, Jon Salmanton-García, MPH;MSC, Jörg Janne Vehreschild, Martin Christner, Stefanie K Gräfe, Iker Falces-Romero, Katrien Lagrou, Johan Maertens, Agustín Reséndiz- Sharpe, Zdenek Racil, Barbora Weinbergerová, Maricela Valerio, MD, PhD, Patricia Muñoz, Ola Blennow, Prof, Blandine Rammaert, Alen Ostojic, Yohann Le Govic, Cornelia Lass-Flörl, Prof, Susann Rössler, Karin van Dijk, Nick de Jong, Jörg Steinmann, Prof, Guillaume Desoubeaux, Prof, Nael Alakel, Dr, Nikolay Klimko, Enrico Schalk, Prof, Marie-Pierre Brenier-Pinchart, Carolina Garcia-Vidal, Anne Bergeron, Sung-Yeon Cho, MD, Willem J G Melchers, Maria J G T Vehreschild, Paul E Verweij; Open Forum Infectious Diseases, Volume 7, Issue Supplement_1, October 2020, Pages S795–S796, https://doi.org/10.1093/ofid/ofaa439.1778

Gas-forming infection of the kidneys due to facultative anaerobes; Rößler, S; Kiria, N; Schneider, R; Dtsch Arztebl Int 2020; 117: 870. DOI: 10.3238/arztebl.2020.0870a

Scedosporium apiospermum – Seltener Erreger einer mykotischen Keratitis; Janine Lenk FEBO, Frederik Raiskup, Lutz E. Pillunat, Susann Rößler; Der Ophthalmologe; volume 117, pages1225–1228(2020)

Sörensen M, Khakimov B, Nurjadi D, Boutin S, Yi B, Dalpke AH, Eigenbrod T (2020): Comparative evaluation of the effect of different growth media on in vitro sensitivity to azithromycin in multi-drug resistant Pseudomonas aeruginosa isolated from cystic fibrosis patients. Antimicrob Resist Infect Control 9(1):197. doi: 10.1186/s13756-020-00859-7   

Baumgartl T, Petzold M, Wunderlich, Höhn M, Archambault D, Lieser M, Dalpke A, Scheithauer S, Marschollek M, Eichel VM, Mutters NT, HiGHmed Consortium, and von Landesberger T (2020): In Search of Patient Zero:Visual Analytics of Pathogen Transmission Pathways in Hospitals. IEEE Trans. Vis. Comput. Graph., 1-11, ahead pf print, doi10.1109/TVCG.2020.3030437

Galvanin A, Vogt LM, Grober A, Freund I, Ayadi L, Bourguignon-Igel V, Bessler L, Jacob D, Eigenbrod T, Marchand V, Dalpke A, Helm M, Motorin Y (2020): Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response. Nucl Acid Res, in press, doi:10.1093/nar/gkaa1123

Gradtke AC, Mentrup T, Lehmann CHK, Cabrera-Cabrera F, Desel C, Okakpu D, Assmann M, Dalpke A, Schaible UE, Dudziak D, Schröder B (2020): Deficiency of the Intramembrane Protease SPPL2a Alters Antimycobacterial Cytokine Responses of Dendritic Cells.J Immunol. doi: 10.4049/jimmunol.2000151, Online ahead of print PMID: 33239420, IF 4,886

Schröttner P, Tille E, Lück C, Bunk B Wound infection caused by Photobacterium damselae in a 32-year-old woman: case report and review of the literature GMS Infect Dis 2020; 8:Doc23 (20201117)

Amberge S, Kramer M, Schröttner P, Heidrich K, Schmelz R, Middeke JM, Gunzer F, Hampe J, Schetelig J, Bornhäuser M, Stölzel F. Clostridium Difficile infections in patients with AML or MDS undergoing allogeneic hematopoietic stem cell transplantation identify high risk for adverse outcome.  Bone Marrow Transplant. 2020 Feb;55(2):367-375.

Mycobacterial Cord Factor Reprograms the Macrophage Response to IFN-γ towards Enhanced Inflammation yet Impaired Antigen Presentation and Expression of GBP1. Huber A, Killy B, Grummel N, Bodendorfer B, Paul S, Wiesmann V, Naschberger E, Zimmer J, Wirtz S, Schleicher U, Vera J, Ekici AB, Dalpke A, Lang R.Huber A, et al. J Immunol. 2020 Sep 15;205(6):1580-1592. doi: 10.4049/jimmunol.2000337. Epub 2020 Aug 12.J Immunol. 2020. PMID: 32796022

Siepmann T, Sedghi A, Simon E, Winzer S, Barlinn J, de With K, Mirow L, Wolz M, Gruenewald T, Schroettner P, von Bonin S, Pallesen LP, Rosengarten B, Schubert J, Lohmann T, Machetanz J, Spieth P, Koch T, Bornstein S, Reichmann H, Puetz V, Barlinn K.Siepmann T, et al. Increased risk of acute stroke among patients with severe COVID-19: a multicenter study and meta-analysis.  Eur J Neurol. 2020 Sep 12. doi: 10.1111/ene.14535. Online ahead of print.

Siepmann T, Sedghi A, Barlinn J, de With K, Mirow L, Wolz M, Gruenewald T, Helbig S, Schroettner P, Winzer S, von Bonin S, Moustafa H, Pallesen LP, Rosengarten B, Schubert J, Gueldner A, Spieth P, Koch T, Bornstein S, Reichmann H, Puetz V, Barlinn K. Association of history of cerebrovascular disease with severity of COVID-19. J Neurol. 2020 Aug 6;. doi: 10.1007/s00415-020-10121-0. [Epub ahead of print] PubMed PMID: 32761508; PubMed Central PMCID: PMC7407424.

Boutin S, Dalpke AH. The Microbiome: A Reservoir to Discover New Antimicrobials Agents. Curr Top Med Chem. 2020;20(14):1291-9.

Schmitt FCF, Lipinski A, Hofer S, Uhle F, Nusshag C, Hackert T, Dalpke AH, Weigand MA, Brenner T and Boutin S (2020): Pulmonary microbiome patterns correlate with the course of the disease in patients with sepsis-induced ARDS. J Hosp Inf 105, 438-446;doi: https://doi.org/10.1016/j.jhin.2020.04.028

Kristian Barlinn, Timo Siepmann, Lars-Peder Pallesen, Simon Winzer, Annahita Sedghi, Percy  Schroettner, Kristina Hochauf-Stange, Alexandra Prakapenia, Haidar Moustafa, Katja de With, JenniferLinn, Heinz Reichmann, Jessica Barlinn, Volker Puetz;  Universal laboratory testing for SARS-CoV-2 in hyperacute stroke during the COVID-19 pandemic , doi.org/10.1016/j.jstrokecerebrovasdis.2020.105061

Zimmermann S, Horner S, Altwegg M, Dalpke AH (2020): Workflow optimization for syndromic diarrhea diagnosis using the molecular Seegene Allplex™ GI-Bacteria(I) Assay.Eur. J. Clin. Microbiol. 39(7), 1245-1250; DOI: 10.1007/s10096-020-03837-4                         IF2,591

Blötz C, Singh N, Dumke R, Stülke J. Characterization of an immunoglobulin binding protein (IbpM) from Mycoplasma pneumoniae. Front Microbiol. 2020;685. doi: 10.3389/fmicb.2020.00685.

Boutin S, Dalpke AH (2020): The microbiome: a reservoir to discover new antimicrobials agents. Curr Top Med Chem. doi: 10.2174/1568026620666200320112731.

Cell surface processing of the P1 adhesin of Mycoplasma pneumoniae identifies novel domains that bind host molecules. Widjaja M, Berry IJ, Jarocki VM, Padula MP, Dumke R*, Djordjevic SP*. Sci Rep. 2020;10(1):6384.

 Prevalence and antibiotic resistance of rectal Mollicutes in HIV-infected men who have sex with men at the University Hospital of Dresden, Germany. Spornraft-Ragaller P, Dumke R; Infection. 2020;48:259-265.

Pseudomonas aeruginosa Modulates the Antiviral Response of Bronchial Epithelial Cells.  Sörensen M, Kantorek J, Byrnes L, Boutin S, Mall MA, Lasitschka F, Zabeck H, Nguyen D, Dalpke AH. Front Immunol. 2020 Feb 4;11:96. doi: 10.3389/fimmu.2020.00096

Stefan Zimmermann, Susanne Horner, Martin Altwegg & Alexander H. DalpkeWorkflow optimization for syndromic diarrhea diagnosis using the molecular Seegene Allplex™ GI-Bacteria(I) assay. Eur J Clin Microbiol Infect Dis (2020). https://doi.org/10.1007/s10096-020-03837-4

Sörensen M, Kantorek J, Byrnes L, Boutin S, Mall MA, Lasitschka F, Zabeck H, Nguyen D and Dalpke AH (2020): Pseudomonas aeruginosa Modulates the Antiviral Response of Bronchial Epithelial Cells.Front. Immunol. 11:96. doi: 10.3389/fimmu.2020.00096, in press

Mycoplasma pneumoniae infections, 11 countries in Europe and Israel, Beeton ML, Zhang XS, Uldum, SA, Bebear C, Dumke R, Gullsby K, Ieven M, Loens K, Nir-Paz R, Pereyre S, Spiller OB, Chalker VJ, the ESCMID Study Group for Mycoplasma and Chlamydia Infections (ESGMAC) Mycoplasma pneumoniae subgroup. 2011 to 2016. Euro Surveill. 2020, 25(2):pii=1900112.

Dumke R, Rust M, Glaunsinger T:MgpB types among Mycoplasma genitalium strains from men who have sex with men in Berlin, Germany, 2016-2018. Pathogens. 2020;9,12. doi: 10.3390/pathogens9010012

Doenhardt M, Seipolt B, Mense L, Winkler JL, Thürmer A, Rüdiger M, Berner R, Armann J.: Neonatal and young infant sepsis by Group B Streptococci and Escherichia coli: a single-center retrospective analysis in Germany-GBS screening implementation gaps and reduction in antibiotic resistance. Eur J Pediatr. 2020 May 23. doi: 10.1007/s00431-020-03659-8.

2019

Increased Neuronal Differentiation Efficiency in High Cell Density-Derived Induced Pluripotent Stem Cells. Srimasorn S, Kirsch M, Hallmeyer-Ellgner S, Lindemann D, Storch A, Hermann A. Stem Cells Int. 2019 Dec 4;2019:2018784. doi: 10.1155/2019/2018784.

Insights into Innate Sensing of Prototype Foamy Viruses in Myeloid Cells. Bergez M, Weber J, Riess M, Erdbeer A, Seifried J, Stanke N, Munz C, Hornung V, König R, Lindemann D. Viruses. 2019 Nov 26;11(12):1095. doi: 10.3390/v11121095.

Organization of multi-binding to host proteins: The glyceraldehyde-3-phosphate dehydrogenase (GAPDH) of Mycoplasma pneumoniae.  Grimmer J, Dumke R: Microbiol Res. 2019;218:22-31.

RNA Modifications Modulate Activation of Innate Toll-Like Receptors. Freund I, Eigenbrod T, Helm M, Dalpke AH. Genes (Basel). 2019 Jan 29;10(2). pii: E92. doi: 10.3390/genes10020092. Review. PMID: 30699960  Free ArticleSimilar articles

First detection and characterization of macrolide-resistant Mycoplasma pneumoniae strains in Cuba.  Rodriguez N, Mondeja B, Sardiñas R, Vega D, Dumke R. ; Int J Infect Dis. 2019;80:115-117.

Gut microbiome patterns correlate with higher postoperative complication rates after pancreatic surgery;   Schmitt F, Brenner T, Uhle F, Loesch S, Hackert T., Ulrich A, Hofer S, Dalpke AH, Markus A, Weigand and Boutin S; BMC Microbiology (2019) 19:42; https://doi.org/10.1186/s12866-019-1399-5

Crucial role of nucleic acid sensing via endosomal Toll-like receptors for the defense of Streptococcus pyogenes in vitro and in vivo:  Hafner A, Kolbe U, Freund I, Castiglia V, Kovarik P, Poth P, Herster F, Weigand MA, Weber AN, Dalpke AH and Eigenbrod T (2019):  Front Immunol, 10:198.doi: 10.3389/fimmu.2019.00198, PMID: 30846984   Free PMC Article

Early Detection of Infection Chains & Outbreaks: Use Case Infection Control Stud Health Technol Inform. 2019; Volume 258: ICT for Health Science Research, A. Shabo (Shvo) et al.  A. SARGEANT,1, T. von LANDESBERGER, C. BAIER, F. BANGE, A. DALPKE, T.ECKMANNS, S. GLÖCKNER, M. KAASE, G. KRAUSE, M. MARSCHOLLEK, B. MALONE, M. NIEPERT, S. REYa, A. WULFF, Consortium H, S. SCHEITHAUER, (Eds.), p. 245-246, doi:10.3233/978-1-61499-959-1-245

Long-term low rate of macrolide-resistant Mycoplasma pneumoniae strains in Germany. Dumke R, Ziegler T; Antimicrob Agents Chemother. 2019;63:e00455-19.

2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms.  Freund I, Buhl DK, Boutin S, Kotter A, Pichot F, Marchand V, Vierbuchen T, Heine H, Motorin Y, Helm M, Dalpke AH, Eigenbrod T (2019).  RNA, pii: rna.070243.118. doi: 10.1261/rna.070243.118

Detection of Robinsoniella peoriensis in multiple bone samples of a trauma patient Percy Schröttner, Kathleen Hartwich, Boyke Bunk, Isabel Schober, Sina Helbig, Wolfram W. Rudolph, Florian Gunzer; Anaerobe: 10.1016/j.anaerobe.2019.05.001; S1075-9964(19)30079-4; 10.1016/j.anaerobe.2019.05.001

Comparison of VITEK 2, MALDI-TOF MS, 16S rRNA gene sequencing, and whole-genome sequencing for identification of Roseomonas mucosa; Wolfram W. Rudolph, Florian Gunzer, Melanie Trauth, Boyke Bunk, Richard Bigge, Percy Schröttner; Microbial Pathogenesis, Volume 134, September 2019, 103576

Prevalence of macrolide- and fluoroquinolone-resistant Mycoplasma genitalium strains in clinical specimens from men who have sex with men of two sexually transmitted infection practices in Berlin, Germany. Dumke R, Ziegler T, Abbasi-Boroudjeni N, Rust M, Glaunsinger T.; Abstract;  J Glob Antimicrob Resist. 2019;18:118-121.

How MALDI-TOF mass spectrometry can aid the diagnosis of hard-to-identify pathogenic bacteria – the rare and the unknown; Markus Kostrzewa, Elisabeth Nagy, Percy Schröttner & Arthur B. Pranada;  Expert Review of Molecular Diagnostics, DOI: 10.1080/14737159.2019.1643238; To link to this article:  https://doi.org/10.1080/14737159.2019.1643238

Bacterial biofilm composition in healthy subjects with and without caries experience. Schoilew K, Ueffing H, Dalpke A, Wolff B, Frese C, Wolff D, Boutin S. J Oral Microbiol;11(1):1633194. doi: 10.1080/20002297.2019.1633194.2019.

Amplicon-based microbiome study highlights the loss of diversity and the establishment of a set of species in patients with dentin caries.  Wolff D, Frese C, Schoilew K, Dalpke A, Wolff B, Boutin S (2019). PLoS One. 14(7):e0219714. doi: 10.1371/journal.pone.0219714.

Wie beeinflusst das Mikrobiom den Verlauf der Mukoviszidose?  Boutin S, Hammermann J, Dalpke A (2019):  Päd. Praxis 92 (3): 391-400

 Clostridium Difficile infections in patients with AML or MDS undergoing allogeneic hematopoietic stem cell transplantation identify high risk for adverse outcome. Amberge S, Kramer M, Schröttner P, Heidrich K, Schmelz R, Middeke JM, Gunzer F, Hampe J, Schetelig J, Bornhäuser M, Stölzel F.;  Bone Marrow Transplant. 2019 Sep 18. doi: 10.1038/s41409-019-0678-y.

Comparative genomic analysis revealed high prevalence of inter-species in vivo transfer of carbapenem resistance plasmids in patients with hematological malignancies.   Kocer K, Boutin S, Dalpke AH, Heeg K, Mutters NT, Nurjadi D.;  Clin Microbiol Infect. 2019 Oct 22. pii: S1198-743X(19)30548-8. doi: 10.1016/j.cmi.2019.10.014. [Epub ahead of print] PMID: 31654794

O. Herchenröder, M. Löchelt, F. Buseyne, A. Gessain, M.A. Soares, A.S. Khan, and D.Lindemann. (2019). Twelfth International Foamy Virus Conference—Meeting Report. Viruses, 11(2): E134. Abstract

TraFo-CRISPR: Enhanced Genome Engineering by Transient Foamy Virus Vector-Mediated Delivery of CRISPR/Cas9 Components; F. Lindel, C.R.Dodt, N. Weidner, M. Noll, F. Bergemann, R. Behrendt, S. Fischer, J. Dietrich, M. Cartellieri, M.V. Hamann, and D. Lindemann. (2019). . Molecular Therapy Nucleic Acids, 18: 708-726. Abstract

Corrigendum to "Spumaretroviruses: Updated taxonomy and nomenclature; A.S. Khan, J. Bodem, F. Buseyne, A. Gessain, W. Johnson, J.H. Kuhn, J. Kuzmak, D.Lindemann, M.L. Linial, M. Löchelt, M. Materniak-Kornas, M.A. Soares, W.M. Switzer. (2018). " [Virology 516 (2018) 158-164]. Virology, 528: S0042-6822(18)30390-8. Abstract

Tödliches Reisemitbringsel in Sachsen. A. Thürmer, J. Seibt, M. Meinhardt. Ärzteblatt Sachsen 1/2019, 30. Jahrgang - Januar 2019

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2. Cervero-Aragó S, Schrammel B, Dietersdorfer E, Sommer R, Lück C, Walochnik J, Kirschner A. Viability and infectivity of viable but nonculturable Legionella pneumophila strains induced at high temperatures. Water Res. 2019 Jul 1;158:268-279. doi: 10.1016/j.watres.2019.04.009. Epub 2019 Apr 9.

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7. Palusinska-Szysz, M., R. Luchowski, W. I. Gruszecki, A. Choma, A. Szuster-Ciesielska, C. Lück, M. Petzold, A. Sroka-Bartnicka, and B. Kowalczyk. 2019. The Role of Legionella pneumophila Serogroup 1 Lipopolysaccharide in Host-Pathogen Interaction. Frontiers in Microbiology 10 (2890).

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